ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2026-09-29 00:28:26, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XR_009818916 3634 bp RNA linear VRT 02-JAN-2024
DEFINITION PREDICTED: Colius striatus NRDE-2, necessary for RNA interference,
domain containing (NRDE2), transcript variant X3, misc_RNA.
ACCESSION XR_009818916
VERSION XR_009818916.1
DBLINK BioProject: PRJNA1057818
KEYWORDS RefSeq.
SOURCE Colius striatus (speckled mousebird)
ORGANISM Colius striatus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
Coraciimorphae; Coliiformes; Coliidae; Colius.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_084764) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_028858725.1-RS_2023_12
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 12/28/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3634
/organism="Colius striatus"
/mol_type="transcribed RNA"
/isolate="bColStr4"
/db_xref="taxon:57412"
/chromosome="6"
/sex="female"
/tissue_type="lung"
/dev_stage="adult"
/geo_loc_name="Denmark: Copenhagen Zoo"
/lat_lon="55.67256961 N 12.52133664 E"
/collected_by="Mads Bertelsen"
gene 1..3634
/gene="NRDE2"
/note="NRDE-2, necessary for RNA interference, domain
containing; Derived by automated computational analysis
using gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins"
/db_xref="GeneID:104559374"
misc_RNA 1..3634
/gene="NRDE2"
/product="NRDE-2, necessary for RNA interference, domain
containing, transcript variant X3"
/db_xref="GeneID:104559374"
ORIGIN
tgcgccccagcggcggttggggcggatagcagcggcagtaagctgagacatggcgttgttcccggccttcgccggggcccccgagcccggggagcccctagccggcagcagccggggcctcaggaaagaattggactggcttagtaacccaagcttctgtacaggagatgtactattactgaatcaaggcactacagaagatacagatctcaaccctgaaaaatcaccattaataaggactacttccaaatcagagttgtcaaaggaaagcgactcagatgagagtctgaaacagtcaagtaagaaaaggaaaaagaaaaaacatcaccactataagaagacaaaaaagaaaagcagaggggactccagtagcagtgaatcagacttggatgctaagcacatcaaggacaaaggtgcaggaagtggaagagatcataaaaaggaagtagcagcaaagcatttattgttctgtgctgttttctttagacttcttgttcatggtacatggagtctagataagaaagcatcaaaccttaccaacaatcgctttgtttggcttgatgatatccaggcttccacagcagaaaccttcagaatagacaagaaaccagaccctgcaaactgggcttacaaatccctgtatcgaggggacatagcaagatacaaaaggagaggagagtcatgtcttggcatagatgcaaagaaacaatgtgtaacttgggacagttctacgtccaaaaaaaagcaattacagacacgacctgagcgctatttcacaaagaacaatgtgaagatgctgaacacagatgggattcctgttagcaataaaagctctccatccgactcaactgcttttataccagttttagaaatggaaactgatgattcttccaacacaacaggagtaaatcctcttgggatttatgatccatcaacaacagtgtggctacaaggaaaaggcaagaatgcagaaaatgagcctgcagatacacagcaaccgattgaagagcccaggataaacattaactctagtctaatgacaaaagtggaagaacataacaagaaagtcagagaaaacccaagagatatcaatgcttggatggaatttgtttcttttcaggatgaactaatgagaggacccagcccttatgccagtaagggagagcaggacataagaagaaaatcactgaagttaatcttagaaaagaaactggctattttagagagggcaattgaaagcaatccaagtaatgttgacctgaaactcgccaggctgaaactttgcacagaattctgggaaccaccagctttagtaaaagaatggcagaagctaattttcttacatccaaataatccagaactgtggaagaaatatctcctgttctgtcaaagtcagttcactaccttttcagtgtcaaaaatcaatagtctctatggaaaatgtttgactacattggcagctgtacaagatggcagcatggtgtctcatcctctgctccctggcacagaagaagctatgctaggtatatttattcagcagtgccactttctgagacaagctggccactctgagaaagcagtgtcattgtttcaggctctgattgacttcaccttcttcaaacctgacagcgtaaaagatttgccaacgagggggcaggtggaattctttgaacccttttgggatagtggagagccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctggattgttcttaagcctgatgatgatgatgaagaagacatagatgaggatgaagaaataaaggataagactctccccaagtggcatatttggttggatattgaatattctcgtgaagcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtattatttgatgatcttggaccgtctttaatccggctttctaatccagatctccagtgtcaacttgtgtactcatttttgcaattcctgggaattccatgtacaagtaaactctttccttccaacctgtatgttgccatggatgaaaataacatctttgacagtgtgctttctgatgaaaagccactgacttctgttgattttccactttctggattcaacagtcttggtcatatggacacagtgctacgacggagacatcacataggccactataaagaaggagaagagttcatacagaatgtttttcatgttctgttccagctgttttcaggaaaggaaaaatctaacctgtccgtctgttggttacagtatgaaatatctaaggtagttcagtgtctccaagtaaaaaacaagaagaagctgaaagcacaagggaggaagagtaaaaagttggccaagaatctccttaaagcacctgacaaccgaaactacctctgtctctggaaactctatgcctacctagaatggttgcttggtaacattgatgatgctaggaaggtatttgacacagctctttgcacagcagggacaggaggattgaagagtccccagctctgcagcctcagtttgctttatgctcagctggaagtggaactcctagaaagtatagaaggagctgttatgtcacgtgctgttcatatattgaccaaattggctgaaagtggactatatgtgccctatagtggacaagtgttatctgtgagtgtcttgaaagctcgtaaaacttacgagcatgcactacaagattatttaagtagagcaccggtttctgatcaagatcagatcagtgatgccaatcagctggttaacgtggttggttgttatgcgctgttccagtatttgactgttggcattgatgctgcgttattaatatatgcacagactttggaaaaacttgaagctcctggtccacaaaaatgtgaaaatactggagagaattttggcattcagaattttcccactgcccttgaagctgtcacactgctgcatacaaatttactcagattccacatgaaaattagtttttatcctttgaatcctctttgcaaggcactaacggaggctctgaaacggtttcctagcaaccagtccctgtggaggtcgtatatccacatccagaggaagtctcacagtgctagcaaagcacgaagattttttgatgatgtcacaagatgtactaactctttagagccatggctgtttgccatccaagcagagcagatgagaaaaaaactcattgagactgtccagagggcagatgttggtgaaatacattctactattcctgaaactgggttaacaaatcggattgtagctctatttgaacatgcagttcagagtgaaaatggtgcccattgcccgctgctgtggagaatgtatttgagctttctgtgtggtagccttctctacaacaaggtgactagctcagtggatgaagggccagcagtggatgtttatctcacctttagcaagccttttccagtgtctccctaacaccattgtagacaagctgatgaggcatggattgggcttcactaggaaagaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggttctctacctggatg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]