LOCUS       XM_053323471            1256 bp    mRNA    linear   VRT 26-FEB-2023
DEFINITION  PREDICTED: Scomber japonicus vimentin-related 2 (vimr2), mRNA.
ACCESSION   XM_053323471
VERSION     XM_053323471.1
DBLINK      BioProject: PRJNA928096
KEYWORDS    RefSeq.
SOURCE      Scomber japonicus (chub mackerel)
  ORGANISM  Scomber japonicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Scomber.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_070585) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_027409825.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/25/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1256
                     /organism="Scomber japonicus"
                     /mol_type="mRNA"
                     /isolate="fScoJap1"
                     /specimen_voucher="20180430"
                     /db_xref="taxon:13676"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="muscle, liver, gill, brain, gonad"
                     /dev_stage="juvenile"
                     /geo_loc_name="South Korea: Gyeongsangnam, near Dara
                     National Park"
                     /lat_lon="34.77106278 N 128.39832655 E"
                     /collection_date="2019-07-08"
                     /collected_by="JinGu Kim and Chul Lee"
     gene            1..1256
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:128362642"
     CDS             38..1201
                     /gene="vimr2"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_053179446.1"
                     /db_xref="GeneID:128362642"
                     /translation="

MLRVSSYRKLFEEGSWSPNGSSSMQCAGQYRASVRGAAADDCDCDKLDFVAARALSKEGLDQFVKDRTIIAALNDRLVRLIKLAHCFEEENESLECQIEELEDKLSDRQASSTLTTTVAVPDFSLDAVVDRLRVERDEILCDTEELQRELQHLKQEYEKVAQQKIFLQQERQDVTEEVDTVTAKCLALREQAAIYEEQLANMEAQHKTAVEDLLDPAEETTGAVATLKFGSPDITAALDVKEYYCQLAESLQFERGVSSSADVPSGDGEVGVGGAAGSTVKDLTKTEDINELKMLISELQKELSELEKCNEELEDEVEMKKAAYMEEIADLECTIEEMRLQEADFEAQMREQCEEYKELLSEKMAREIEITAYRSLVEGEEERLCNL"

     misc_feature    254..1186
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
ORIGIN      

cctgttgtgttgtagctaaacatccaaagccgcggccatgctcagagtgtcttcttaccgcaagctgtttgaggaggggagctggagtccaaatggaagctccagtatgcagtgtgcaggccagtaccgggcctccgtcaggggtgcggctgctgacgactgtgactgtgacaagttggacttcgtagctgccagggcgctgagcaaggagggtctggaccagtttgtcaaagatcgcaccatcattgctgctctcaacgaccgactggtcaggctgattaaactggctcattgtttcgaggaggagaatgagtctcttgagtgtcagattgaggagctggaggacaagctgagtgatcgacaagcctcctccaccctcaccaccactgtggctgtaccggacttcagcctggacgcagtggtggacagactgcgtgtggagagggatgagattctgtgtgacacagaagagctgcagagagagctgcagcatctgaagcaggagtatgagaaagttgctcagcaaaagatcttcctccagcaggaacgccaagatgtcacagaggaagtggacactgtgacagcaaagtgtttggcgctgagggagcaagcggctatctacgaggagcagctggccaacatggaggcccagcacaagacggcagtggaggatctgctggacccagctgaagagactacaggagcggtggcgactcttaaatttggcagccctgacatcactgcagccttggatgtaaaagagtactactgccagctggctgagagcctgcagtttgagcgaggtgtatcctcctctgctgatgttcccagtggtgatggagaagtgggagttggaggagctgcggggtcaacagtcaaagacttgacaaagacagaggacatcaatgaattgaagatgctgatttcagagctacaaaaggagctttcagagcttgaaaaatgcaacgaggagttggaggacgaggttgagatgaagaaggccgcctacatggaggagattgctgacttggagtgtactatagaagaaatgaggctccaggaggctgacttcgaagcgcagatgagagagcagtgtgaagagtacaaggagctgctcagtgagaagatggccagagagatagagatcactgcctacaggagtctggtggagggagaggaggagaggctttgcaacctgtgacttgaggccggcgagtcagacaggcttgatgctcccccacacgtggatcagaaaa

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