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2026-09-29 00:40:36, GGRNA.v2 : RefSeq release 233 (Jan, 2026)

LOCUS       XM_035852643            3190 bp    mRNA    linear   INV 14-AUG-2020
DEFINITION  PREDICTED: Folsomia candida protein argonaute-1-like
            (LOC110851464), transcript variant X2, mRNA.
ACCESSION   XM_035852643
VERSION     XM_035852643.1
DBLINK      BioProject: PRJNA397071
KEYWORDS    RefSeq.
SOURCE      Folsomia candida
  ORGANISM  Folsomia candida
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola;
            Entomobryomorpha; Isotomoidea; Isotomidae; Proisotominae; Folsomia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_019091198.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Folsomia candida Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Folsomia candida"
                     /mol_type="mRNA"
                     /strain="VU population"
                     /db_xref="taxon:158441"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="whole body"
                     /dev_stage="adults and juveniles"
     gene            1..3190
                     /gene="LOC110851464"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 20 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:110851464"
     CDS             221..1024
                     /gene="LOC110851464"
                     /codon_start=1
                     /product="protein argonaute-1-like"
                     /protein_id="XP_035708536.1"
                     /db_xref="GeneID:110851464"
                     /translation="
MHFISCNRSFFNPFPQNRHPLDSMLELLHGHYQSLCLGSENTATLNIDLATKAFYKQTPLAEFARSVLKLHKDDSLDLVCWDDRTIDVVSEALRGKLIKYGTGRCNQKGVYEKYHQFTANGLILRSAENYEFNMTDEKGITRSINIVQYMQKFKNTTIRFPKWPVVHIGNKNMTNYVPLELCMIITQPYRRKMEPKLTSAMIKGVAIEPVARFKAIDQARKGSSSKPTELIPRASKFYRDSKSPPFVRVIWIVHVESGREGVPIRKL"
     misc_feature    239..388
                     /gene="LOC110851464"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    395..775
                     /gene="LOC110851464"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(569..571,614..616,656..658,668..670,722..724,
                     743..745,749..751)
                     /gene="LOC110851464"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
ORIGIN      
tctaacaaattaaaacttgaacacccaacgtttttgaaattctaattcattcatcgatttgtgtgctaatgtaaaagtaatttcctctcttcattaatttcttagtggtcgcgacagttgccaccaactcggtgatcgagtttcttggatcagggctggagaggggcaaacaggttgtccagcctcaggatgtgatccaaggcctcgacgtcccccatcaatgcacttcatcagctgcaaccgcagcttcttcaatcctttcccacagaacagacatccgctggattcaatgttggagttgctgcacggccactatcagtcgttgtgcctcggatccgaaaatactgctactctcaatattgatttggcgaccaaggcgttctataaacaaacgccacttgcagagtttgctcgcagtgttttaaagttgcacaaggatgactcgctcgaccttgtttgttgggacgaccgaacgattgatgtggtctcggaagctttgagaggcaaactcatcaaatatggaacaggacgttgcaatcagaaaggtgtctacgagaagtaccaccaattcacggcgaatgggctgatcttgcggtccgcggaaaattacgagttcaacatgacagacgaaaagggcatcacaaggtcaatcaacattgtccaatacatgcaaaaattcaagaacacgaccattcgcttccccaaatggcccgtggtgcatattgggaataagaacatgacgaactacgttccactcgagctgtgcatgatcatcacgcagccgtatcgcagaaaaatggaacccaagctcacgagcgctatgatcaaaggcgttgccatcgagccagtggctcgtttcaaggcaatcgaccaagcgagaaaaggaagttcttcgaaaccaaccgagcttatcccacgcgcatcaaagttttatcgtgactcgaaatcgcctccgtttgtccgggtcatctggatcgtccatgtcgaaagtggccgtgaaggcgtccccattcggaagttgtagacgtctggctgtgtagacgttctttttcccatcgaagggagtcgtggctctaagcgtggcctggcactgggtctcaaattccttccagatgatgggcagcattcggtcggggagcccagccatctcgcgcccttccttcgccgctttcaacacctgagcatctttcctcttcttcgcggcggcggcagctgtctggtcggacgatacgatttctacattctcaattactgcgttataaattttacgacgcagtaattgagaatgtggaaatcgttacgattcgtaatgatacagcgtttgtggaaaatttggtggcttaccgagctcaacatcttctcgagagggagggtgagaaggctgacttggtcgatctcgccgaaaagttgacaattcatcccgacttggccaaacgctattcgatgttcttcgtataaagtatggatcttaaactacacgacttcataatgataattggattgataaagtcgattttctattattcttccattgttgttaatatttttatttacttatttattttgttgaagtcattttattgactgttttggatttatttcatgtaaaaagattcttttactgtcatttagattacttttaattcatggcagtttaaattataactcattttaaagtttagaataatttagtgaagttgtcacaaaaatatgttacaactatttagacatgtgcaataaaatatggcatactaaaaattgctaaattgttataaattgcatgcatagattcctccactactggagaccactttgacattgatacataccagactaattaaattatgcaatagtgtgacgacttttaagacagtatgttttgttacgtctactgttgctgaaatgttgcagaaagctcaacagctttgtcaatcaaattctcatgcatgacattcacgttgttatcgcacaaattgtcaacggccttgcatgcctatactgcacacacacacgtaccacgccatgcgcaaagttatcattaagaataagatgagtttatgttgttgatttcttaaaacgtgatagaatcgagataaaaatgagttgcattagtaagccctattttcggtgtggaattcaatgcaatacaagttaaaaatacacatccgaagcaagaactctctcttcttccagctccagacaagtacaaaacttttaatattttgtgactactatttcctcgccctaccgaccttttcgtcgtcactgtaaataaaaatgctcatgctcaaaacagatttgtggatgcactatttagttggcaaatcactccttgccatcgtagtatttctcctgaaaaaaagtaactatattgacaacacggttgtctcctccgtttatttatcgtgtgggcgtcaattcaacaacgcttgtccatgggacgacattcgctaatctagaaatgacaacagttatataataacagcacataaactgtttactcaagttctattattgtcccccgactcccacgatgttggtaaaatggcctgaaatcgcttttacgaaattatttaaactaataattcgcccgtctttctttgcgtaagtaaacgtaaaaaaataatttcatacacgatacaaggttgccatcaaggtttttcaggtattgacaggagttcggaaattatggctggcatgcgaaggcgacggtatgcatgagacggtttcttgttatcgtatgaggtgtatgatgccgttgtttagatctgtttaagcagtggcagagataaaaaatatatgtccgccacatctcagcaacagattaccgtggccttagtcgaagtggaggcgaagatactgagtaatgtttcagaacgaggatgataagctttgcaattgtgggtgtgtgccattccttggtggtaagtgtataggtaagtgtaagtgtgaatgtaaaaaaaaacgtgctttcacccacaattccgagcacgagttgtcccatacaatgttggtacagtactattcgagctctggaacatccaaccatcatttgatgtttgatatgtgaaaataatggtaagacttggatttgatttttgagtgagacacgcgacgacgaacgtgttggcgatattattctgcatgagaaaaattaaggacacaatttgtgagagcactgatcatgaag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]