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Previous release (v1)
2026-09-27 23:14:28, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XR_011603027 3437 bp RNA linear VRT 24-JAN-2025
DEFINITION PREDICTED: Chaetodon trifascialis NRDE-2, necessary for RNA
interference, domain containing (nrde2), transcript variant X2,
misc_RNA.
ACCESSION XR_011603027
VERSION XR_011603027.1
DBLINK BioProject: PRJNA1210627
KEYWORDS RefSeq.
SOURCE Chaetodon trifascialis (chevron butterflyfish)
ORGANISM Chaetodon trifascialis
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Eupercaria; Chaetodontiformes; Chaetodontidae;
Chaetodon.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_092069) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_039877785.1-RS_2025_01
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 01/22/2025
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3437
/organism="Chaetodon trifascialis"
/mol_type="transcribed RNA"
/isolate="fChaTrf1"
/db_xref="taxon:109706"
/chromosome="14"
/sex="male"
/tissue_type="heart, liver"
/dev_stage="adult"
/geo_loc_name="Saudi Arabia: Red Sea"
/lat_lon="22.307781 N 38.967423 E"
/collection_date="2019-07-20"
/collected_by="Jessica Nowicki"
gene 1..3437
/gene="nrde2"
/note="NRDE-2, necessary for RNA interference, domain
containing; Derived by automated computational analysis
using gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 long SRA read"
/db_xref="GeneID:139341999"
misc_RNA 1..3437
/gene="nrde2"
/product="NRDE-2, necessary for RNA interference, domain
containing, transcript variant X2"
/db_xref="GeneID:139341999"
ORIGIN
ttgtatcatcatggcgctgtttccagctttcgcagaagtagagagcaacaaagttgaagattcgtccaaagatttagactggctgaagaataagagttttcagactggagatgccctctctcttcacaggcagtattttaagaagactgatgagaaggaatcaagtgtggacagagagctgagctctgtggaggaggagacagaagaccagaaagagggttatgctccacccaaaaagaagaaaaagaagagtgaaaagaagaggaagaagaagaaaaaacacaaaaagaagagtgggacgtattcggacagcaatggatctgactctgaaacgatttaccccagtgacctcaaaagggaaaaagaggcagatgggcctcaagctgctccgttagcaagccgtttctcctggctggatgacctccagtcgcccacagagcagctgttctgtgtggaccgtaaagcagaccaagccaactggacgtacaagtccctgtacagaggagatgttgccaggtataagaggaaaggcagctcgtccctgggtctggacccccacagacagggagtcagctgggaggagtcagagtcaaataagaaacagaaaagcagagccaagaaggaagcagcagacagatacttctcgacagtcagttgccagcagctcaggtctgaaccccccgttcctacaatccccaagattcccgagtgcagtgattccttcagccccaccaccttcctcccactgggtgacgatgaggagaacaaaggaggagagacgggtgacagagtggagacatcattcgtaaatcccctcggtgtgtatgactcctccacggccctgtggctgcagggaaggggacagccggagcagacagagcaggagcagaaggacacgcagacggggcagagtgtgcttttggccgggaggactgaagagtttaacaggcgactcagagagcagccagcagacacgcagctctggatcaaattcatacgataccaggatgagctaaatgcgatagcgtttggaggcaaggaggagcaatatggcagcgatgcggctgagcgccgtcactcttcccagcgagcagtcctggaaaaaaagctgagcatcgcagagcgagcagtggccaccaacccctgctgcattgctctgcagctggagaggctcaggatctgtcaagagctctgggagccctcgcttctggctaaagagtggaagaaactggtgttcctccacccaaacagtgcccccttgtggagggagtatctgctgttcacccagagctacttcagcaacttcactgtgccaaaggtcaactctgcctacgggaagtgtctgagcacgctcagtgctgtgcgtgacggcagcatggtgtctcacccagccctgccagggattgaggaggatatgttggatatcttcacccagcagtgtcacttcttgcgtcagtctggtcattcagagaaggcgatttctctgtttcaggccatgatcgattttactttctacaaacccgacagcgtacgagaactgtccaccaagcagcaggttgagttctttgagccattctgggacagcggggaggcgagggtcggagagccgggggccagaggttggaaagcctggatgctccagcaagagcgaggagggtggctacagcccagtgcagaggaagaagaggaggaggacgaggatgaggaggaggtgaaggatcggagccagcccagacacacggtctggttggacgtggagtcgtctcgcgaggcagctcactggctgccctggaggcccgacaaagccaaaggccagtcagaagaggactgcgaggaccctgacagacaggtattgtttgatgacatcggcccctcgctaatttgtctgtcctcaccagagctccagctccgtcttcttctccgtttcttgtcattcctggggctgcctgttgactcggtgctctctgctgccccctgtcagcctggcctgctgctggagaacctttctctgctcactcagggtcatcagctccagcgtcctctgacctctcatgacctacatgactctggggtcaactctgtaggtctcatgaccactctccagggaccaaggaagttggtggggctcgggaagcagggtgagacgtttgtcacccatgtgttcagtatggtccaacccgtccttcctgcccagcaccgagccatcctgtccctcagctggatgcggtacgagaagctcaagatcttgcgctgcctccatggtggcaacaaaaagcgtctccgctctcagggcaagagcagcaaacgagttgccaagcagctcctcaaagaatccgacaaccgctcgtcgttggcactgtggcgggagtacgcccacctggagtggatgcttggcaaccttgacgaggctcgcaaagtcttctccacggccacagctataggggggggcaaagggctgaggagccccaccctctgtgagctgtgtctgctgtgggcccagctggaagtggaggatgggtcaggtgtgcgaggaggagcactgactgatgccaccgtgtccccagctgtgtgtgtactagccaggctagcagaaggaacctcctcatcctcctcttcatcctgccagcccctctccccggtttccatcctgaaagcccggaggtcatatgaacaggctctgactgccggcttgtcagccctggaccaacacccccacagccctcaggcctgcggaaaaggtcaagaggaccttctaggagagaagctgaggctgagaggcctgacaggctgctacgctctgtttcagtacctcactgtgggcatccaagctgctagtgccatctacagccaggccagacagcacatggaggagctgcaccgcacactaatacttgacaagcagctcaacagtaacgaggaggccagcctcgctaacactgatgctagccaagctgtagttgtttccagccatatcagcaggcactatgctaacaggctagcttctgagtgtgaggtattagcagtgcagcaggcgacgttgcttagatatcacaacagcatcgctgtgtttcccctgctaacactgagacaggtgctgacctctgccatcaccacctggccctgcaacgcccccctctggagcatatatgtacaggtggaggaccgttaccacagtgctggccgggcacgtcgcttttttcactctgtaaccagggacaacagcagcgtgttgccgcgtctctttgccattgttgccgaacaaaaaaggaagcagctggtggatgctgctcagaggtaagcgtagaaaagaagatgagcaggtgcagggtcgttctgcactgatggaataagcattgcaacaccttcaaaaggtcttgttgccacgacaccgcattgcccatcctgccagagaacggcctcagtaaccgtatccgtgg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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