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Previous release (v1)
2026-06-10 07:38:10, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XM_069526305 1795 bp mRNA linear VRT 28-OCT-2024
DEFINITION PREDICTED: Paralichthys olivaceus flagellar attachment zone protein
1-like (LOC138410456), mRNA.
ACCESSION XM_069526305
VERSION XM_069526305.1
DBLINK BioProject: PRJNA1170318
KEYWORDS RefSeq.
SOURCE Paralichthys olivaceus (Japanese flounder)
ORGANISM Paralichthys olivaceus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei;
Paralichthyidae; Paralichthys.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_091093) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_024713975.1-RS_2024_10
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 10/17/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1795
/organism="Paralichthys olivaceus"
/mol_type="mRNA"
/isolate="ysfri-2021"
/db_xref="taxon:8255"
/chromosome="1"
/sex="female"
/tissue_type="muscle"
gene 1..1795
/gene="LOC138410456"
/note="flagellar attachment zone protein 1-like; Derived
by automated computational analysis using gene prediction
method: Gnomon. Supporting evidence includes similarity
to: 1 long SRA read"
/db_xref="GeneID:138410456"
CDS 135..1700
/gene="LOC138410456"
/codon_start=1
/product="flagellar attachment zone protein 1-like"
/protein_id="XP_069382406.1"
/db_xref="GeneID:138410456"
/translation="
MPKNKSKRVPDSEKLFEDLLEAKQKLDSENLNLAHENASLRMAMSCKEATWRKEKESMQNADYERLKEELELDLKDAKKELRIQEKEYRSLSQRNQSQQAESHRIRRDLNQKCNQVNELEHSIKQREQVIDRTLHEKQALDKQIDELKTKLRAMGTKVLQNEPDWQSEVKALKDELSREQAEKKDGLMKIKALKDELSRERAEKEAGFNKIKALKDDLSREQAEKKAGFNKIKALKDELSREQAEKKAGLLKIKALKDELSREQAEKKAGSIKIQAQKDELSREQAEKKAGLIKIKAQKDELSREQAEKKAGLIKIKALKDELSREQAEKQAGLIKIKAQKDKLSREQAEKQAGSNKTKELERLLKVTEEKWGTKHEAQIVHTDQMIASLTCQNMALEASNQKLISMQQAIETRILQNNTEWETKVDALEDRLSCEQMEKEAGFTKIKELEKLVSDTEQMWAAKYEADIKMLILKQIKLQELALMTDKDKAKKEKEQKKAKKEAEKSLKKELKEKKKQEKR"
misc_feature <366..>1271
/gene="LOC138410456"
/note="Chromosome segregation ATPase Smc [Cell cycle
control, cell division, chromosome partitioning]; Region:
Smc; COG1196"
/db_xref="CDD:440809"
polyA_site 1795
/gene="LOC138410456"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
aagagtttgggaagagaccttgggaggacaacagctccaaaactagaccacagatacttaaatcttcgatacacgagaccgtcagaagacagaatatacttcagtacacctacactgttcctgtattagcaaacatgccgaagaacaagtcaaaaagggtgccagactctgagaaattgtttgaggacctccttgaagcgaaacagaagttggactctgagaatttgaatctggctcatgaaaatgccagtttaaggatggccatgtcatgcaaagaagctacatggcggaaggaaaaggagagcatgcagaatgcagattatgaaagactcaaggaggaactagagcttgatctcaaggatgccaagaaggagttgaggatccaagagaaggagtacaggtctttgagtcagcgtaaccaaagccagcaggcagagagccacaggatcagacgtgacctgaatcaaaagtgcaaccaggtgaatgagctggagcactccataaaacagagggaacaggtgatcgacaggactctgcatgagaaacaggcgctggacaaacaaatcgatgagctcaaaaccaagctcagagctatggggacaaaagttctccagaacgagcctgactggcagtcagaagtcaaggctctgaaggacgagctcagccgtgagcaggcggagaagaaggatgggttaatgaaaatcaaggcactgaaggacgagctcagccgtgagcgggcagagaaggaggctggcttcaataaaatcaaggctctgaaggacgacctcagccgtgagcaggcagagaagaaggctggcttcaataaaatcaaggctctgaaggacgagctcagccgtgagcaggcagagaagaaggctggcctccttaaaatcaaggctctgaaggacgagctcagccgtgagcaggcagagaagaaggctggctccattaaaatccaggctcagaaggacgagctcagccgtgagcaggcagagaagaaggctggcctcattaaaatcaaggctcagaaggacgagctcagccgtgagcaggcagagaagaaggctggcctcattaaaatcaaggctctgaaggacgagctcagccgtgagcaggcagagaagcaggctggcctcattaaaatcaaggctcagaaggacaagcttagccgtgagcaggcagagaagcaggctggctccaataaaaccaaggagctggagagactgctcaaggtcacagaagagaagtgggggaccaagcatgaggctcaaattgtccatacggatcagatgatcgccagtctcacctgtcagaatatggcactggaagccagcaaccagaagctgatctccatgcagcaagccattgagacaaggatcctccagaacaacacagagtgggagacgaaagttgacgctctggaggaccgtctcagttgtgagcagatggagaaggaggctggcttcacaaaaatcaaggagctggagaaactggtcagcgacactgagcagatgtgggcggccaagtacgaggccgacatcaagatgctcatcctgaaacagatcaagcttcaggaactggccttgatgactgacaaggacaaggcgaagaaagaaaaagagcaaaagaaagcaaagaaagaggcagagaagagcctaaagaaggagctgaaagagaagaagaagcaagagaagagatagaaactagacagagagagggaggagaagaggcaaaggaaatgaaaaagaaaatatgtgcctctcttaaaaaaaaaataaagttgaaatagaatcaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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